Serveur d'exploration Cyberinfrastructure

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Metadata based management and sharing of distributed biomedical data

Identifieur interne : 000201 ( Main/Exploration ); précédent : 000200; suivant : 000202

Metadata based management and sharing of distributed biomedical data

Auteurs : Fusheng Wang ; Cristobal Vergara-Niedermayr ; Peiya Liu

Source :

RBID : PMC:4019237

Abstract

Biomedical research data sharing is becoming increasingly important for researchers to reuse experiments, pool expertise and validate approaches. However, there are many hurdles for data sharing, including the unwillingness to share, lack of flexible data model for providing context information, difficulty to share syntactically and semantically consistent data across distributed institutions, and high cost to provide tools to share the data. SciPort is a web-based collaborative biomedical data sharing platform to support data sharing across distributed organisations. SciPort provides a generic metadata model to flexibly customise and organise the data. To enable convenient data sharing, SciPort provides a central server based data sharing architecture with a one-click data sharing from a local server. To enable consistency, SciPort provides collaborative distributed schema management across distributed sites. To enable semantic consistency, SciPort provides semantic tagging through controlled vocabularies. SciPort is lightweight and can be easily deployed for building data sharing communities.


Url:
DOI: 10.1504/IJMSO.2014.059126
PubMed: 24834105
PubMed Central: 4019237


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Metadata based management and sharing of distributed biomedical data</title>
<author>
<name sortKey="Wang, Fusheng" sort="Wang, Fusheng" uniqKey="Wang F" first="Fusheng" last="Wang">Fusheng Wang</name>
</author>
<author>
<name sortKey="Vergara Niedermayr, Cristobal" sort="Vergara Niedermayr, Cristobal" uniqKey="Vergara Niedermayr C" first="Cristobal" last="Vergara-Niedermayr">Cristobal Vergara-Niedermayr</name>
</author>
<author>
<name sortKey="Liu, Peiya" sort="Liu, Peiya" uniqKey="Liu P" first="Peiya" last="Liu">Peiya Liu</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">24834105</idno>
<idno type="pmc">4019237</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019237</idno>
<idno type="RBID">PMC:4019237</idno>
<idno type="doi">10.1504/IJMSO.2014.059126</idno>
<date when="2014">2014</date>
<idno type="wicri:Area/Pmc/Corpus">000444</idno>
<idno type="wicri:Area/Pmc/Curation">000444</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000189</idno>
<idno type="wicri:Area/Ncbi/Merge">000522</idno>
<idno type="wicri:Area/Ncbi/Curation">000522</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000522</idno>
<idno type="wicri:doubleKey">1744-2621:2014:Wang F:metadata:based:management</idno>
<idno type="wicri:Area/Main/Merge">000201</idno>
<idno type="wicri:Area/Main/Curation">000201</idno>
<idno type="wicri:Area/Main/Exploration">000201</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Metadata based management and sharing of distributed biomedical data</title>
<author>
<name sortKey="Wang, Fusheng" sort="Wang, Fusheng" uniqKey="Wang F" first="Fusheng" last="Wang">Fusheng Wang</name>
</author>
<author>
<name sortKey="Vergara Niedermayr, Cristobal" sort="Vergara Niedermayr, Cristobal" uniqKey="Vergara Niedermayr C" first="Cristobal" last="Vergara-Niedermayr">Cristobal Vergara-Niedermayr</name>
</author>
<author>
<name sortKey="Liu, Peiya" sort="Liu, Peiya" uniqKey="Liu P" first="Peiya" last="Liu">Peiya Liu</name>
</author>
</analytic>
<series>
<title level="j">International journal of metadata, semantics and ontologies</title>
<idno type="ISSN">1744-2621</idno>
<idno type="eISSN">1744-263X</idno>
<imprint>
<date when="2014">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p id="P1">Biomedical research data sharing is becoming increasingly important for researchers to reuse experiments, pool expertise and validate approaches. However, there are many hurdles for data sharing, including the unwillingness to share, lack of flexible data model for providing context information, difficulty to share syntactically and semantically consistent data across distributed institutions, and high cost to provide tools to share the data.
<italic>SciPort</italic>
is a web-based collaborative biomedical data sharing platform to support data sharing across distributed organisations.
<italic>SciPort</italic>
provides a generic metadata model to flexibly customise and organise the data. To enable convenient data sharing,
<italic>SciPort</italic>
provides a central server based data sharing architecture with a one-click data sharing from a local server. To enable consistency,
<italic>SciPort</italic>
provides collaborative distributed schema management across distributed sites. To enable semantic consistency,
<italic>SciPort</italic>
provides semantic tagging through controlled vocabularies.
<italic>SciPort</italic>
is lightweight and can be easily deployed for building data sharing communities.</p>
</div>
</front>
</TEI>
<affiliations>
<list></list>
<tree>
<noCountry>
<name sortKey="Liu, Peiya" sort="Liu, Peiya" uniqKey="Liu P" first="Peiya" last="Liu">Peiya Liu</name>
<name sortKey="Vergara Niedermayr, Cristobal" sort="Vergara Niedermayr, Cristobal" uniqKey="Vergara Niedermayr C" first="Cristobal" last="Vergara-Niedermayr">Cristobal Vergara-Niedermayr</name>
<name sortKey="Wang, Fusheng" sort="Wang, Fusheng" uniqKey="Wang F" first="Fusheng" last="Wang">Fusheng Wang</name>
</noCountry>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000201 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000201 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:4019237
   |texte=   Metadata based management and sharing of distributed biomedical data
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:24834105" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1 

Wicri

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024